r - colorRamp returns 0 -

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i'm trying plot lines , color lines based on probability of connection. given vector of probabilities, use:

colfunc <- colorramp(c("white", "red")) colors <- colfunc(probs)

colors nx3 matrix of rgb values. however, colfunc quite returns 0 value, when attempt plot using these colors, r complains

error in col2rgb(colors) : numerical color values must positive

is there error in way defining color function?

your function works fine, think, doesn't return colors can use plot, because plot wants color, not rgb values in matrix.

there's better way, can covert matrix:

probs <- runif(10) colors <- colfunc(probs) my_col = apply(colors, margin = 1,  function(x) rgb(x[1]/255, x[2]/255, x[3]/255))  plot(1:10, 1:10, col = my_col) # should work fine

or wrap function

better_colfunc <- function(x, ramp = colorramp(c("white", "red"))) {    colors <- ramp(x)    colors = apply(colors, margin = 1,  function(x) rgb(x[1]/255, x[2]/255, x[3]/255))    return(colors) }  plot(1:10, 1:10, col = better_colfunc(probs, ramp = colfunc))

as "colfunc quite returns 0 value", , other issues, you'll need share both data (what probs like?) perhaps actual plotting code. see here tips on making reproducible questions.


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